CRISPR-CAS9-MEDIATED ENHANCEMENT OF HEAT TOLERANCE AND BIOFUEL PRODUCTIVITY IN MICROALGAE: A REVIEW
Abstract
The increasing demand for sustainable and renewable energy sources has intensified interest in microalgae as promising feedstocks for biofuel production. Microalgae possess several advantages, including rapid growth rate, high lipid accumulation, efficient carbon dioxide utilization, and the ability to grow in diverse environmental conditions. However, elevated temperature remains a major challenge affecting algal biomass productivity, photosynthetic efficiency, lipid biosynthesis, and overall industrial performance. Heat stress induces oxidative damage, disrupts metabolic pathways,
and reduces biofuel yield, thereby limiting the commercial feasibility of algal biofuel systems. Recent advances in genetic engineering, particularly CRISPR-Cas9 genome editing technology, have provided new opportunities for improving thermotolerance and metabolic efficiency in microalgae. CRISPR-Cas9 enables precise modification of genes associated with heat shock proteins, antioxidant defense systems, photosynthesis, carbon fixation, membrane stability, and lipid metabolism. In addition, the integration of synthetic biology, systems biology, and multiomics approaches has accelerated the development of stress-resilient algal strains with enhanced biofuel productivity. This review discusses the impact of heat stress on algal systems, recent developments in CRISPR-mediated algal biotechnology, important genetic targets associated with thermal adaptation, and the role of genome editing in improving biofuel production. Furthermore, the review highlights current challenges, prospects, and the potential of CRISPR-engineered thermotolerant microalgae for sustainable renewable energy applications.
Downloads
References
Hassanien A, Saadaoui I, Schipper K, Al-Marri S, Dalgamouni T, Aouida M, Saeed S, Al-Jabri HM. Genetic
engineering to enhance microalgal-based produced water treatment with emphasis on CRISPR/Cas9: a review.
Frontiers in Bioengineering and Biotechnology. 2023 Jan 13;10:1104914.
Lakhawat SS, Malik N, Kumar V, Kumar S, Sharma PK. Implications of CRISPR-Cas9 in developing next generation
biofuel: a mini-review. Current Protein and Peptide Science. 2022 Sep 1;23(9):574-84.
Kukreja S, Gunarathne SS, Giri T, Goutam U, Gautam S. CRISPR-CAS9: a genome editing tool for improvement of
biofuel production in diatoms: a review. Plant Archives. 2021;21(1):202-9.
Rawat, J., Gupta, P. K., Pandit, S., Priya, K., Agarwal, D., Pant, M., ... & Pande, V. (2022). Latest expansions in lipid
enhancement of microalgae for biodiesel production: an update. Energies, 15(4), 1550.
Dhokane D, Shaikh A, Yadav A, Giri N, Bandyopadhyay A, Dasgupta S, Bhadra B. CRISPR-based bioengineering in
microalgae for production of industrially important biomolecules. Frontiers in Bioengineering and Biotechnology.
Oct 26;11:1267826.
Ng IS, Keskin BB, Tan SI. A critical review of genome editing and synthetic biology applications in metabolic
engineering of microalgae and cyanobacteria. Biotechnology Journal. 2020 Aug;15(8):1900228.
Feng S, Xie X, Liu J, Li A, Wang Q, Guo D, Li S, Li Y, Wang Z, Guo T, Zhou J. A potential paradigm in CRISPR/Cas
systems delivery: at the crossroad of microalgal gene editing and algal-mediated nanoparticles. Journal of
nanobiotechnology. 2023 Oct 10;21(1):370.
Rock A, Novoveská L, Green D. Synthetic biology is essential to unlock commercial biofuel production through hyper
lipid-producing microalgae: a review. Applied Phycology. 2021 Jan 1;2(1):41-59.
Kumar G, Shekh A, Jakhu S, Sharma Y, Kapoor R, Sharma TR. Bioengineering of microalgae: recent advances,
perspectives, and regulatory challenges for industrial application. Frontiers in Bioengineering and Biotechnology.
Sep 3;8:914.
Rawat J, Gupta PK, Pandit S, Priya K, Agarwal D, Pant M, Thakur VK, Pande V. Latest Expansions in Lipid
Enhancement of Microalgae for Biodiesel Production: An Update. Energies 2022, 15, 1550 [Internet]. 2022
Muthukrishnan L. Bio‐engineering of microalgae: Challenges and future prospects toward industrial and
environmental applications. Journal of basic microbiology. 2022 Mar;62(3-4):310-29.
Babu SS, Gondi R, Vincent GS, JohnSamuel GC, Jeyakumar RB. Microalgae biomass and lipids as feedstock for
biofuels: sustainable biotechnology strategies. Sustainability. 2022 Nov 14;14(22):15070.
Dhokane D, Chandrashekharaiah PS, Kushwaha S, Bhadra B, Bandyopadhyay A. Recent Advances in Microalgal
Genome Editing with Special Emphasis on CRISPR Mediated Modification Systems.
Singh A, Shourie A, Mazahar S. Integration of microalgae‐based wastewater bioremediation–biorefinery process to
promote circular bioeconomy and sustainability: a review. CLEAN–Soil, Air, Water. 2023 Mar;51(3):2100407.
Kumar V, Sharma N, Jaiswal KK, Vlaskin MS, Nanda M, Tripathi MK, Kumar S. Microalgae with a truncated lightharvesting antenna to maximize photosynthetic efficiency and biomass productivity: Recent advances and current
challenges. Process Biochemistry. 2021 May 1;104:83-91.
Hu J, Wang D, Chen H, Wang Q. Advances in genetic engineering in improving photosynthesis and microalgal
productivity. International Journal of Molecular Sciences. 2023 Jan 18;24(3):1898.
Srivastava RK, Shetti NP, Reddy KR, Aminabhavi TM. Biofuels, biodiesel and biohydrogen production using
bioprocesses. A review. Environmental Chemistry Letters. 2020 Jul;18(4):1049-72.
Fajardo C, De Donato M, Carrasco R, Martínez‐Rodríguez G, Mancera JM, Fernández‐Acero FJ. Advances and
challenges in genetic engineering of microalgae. Reviews in Aquaculture. 2020 Feb;12(1):365-81.
Harada R, Nomura T, Yamada K, Mochida K, Suzuki K. Genetic engineering strategies for Euglena gracilis and its
industrial contribution to sustainable development goals: A review. frontiers in Bioengineering and Biotechnology.
Jul 14;8:790.
Rawat J, Gupta PK, Pandit S, Prasad R, Pande V. Current perspectives on integrated approaches to enhance lipid
accumulation in microalgae. 3 Biotech. 2021 Jun;11(6):303.
Shokravi Z, Shokravi H, Aziz MA, Shokravi H. The fourth-generation biofuel: a systematic review on nearly two
decades of research from 2008 to 2019. Fossil free fuels. 2019 Oct 24:213-51.
Li C, Zheng J, Wu Y, Wang X, Shao H, Yan D. Light-driven synthetic biology: progress in research and
industrialization of cyanobacterial cell factory. Life. 2022 Oct 3;12(10):1537.
Eswaran N, Parameswaran S, Johnson TS. Biofuels and sustainability. Biofuels and Biodiesel. 2021 May 20:317-42.
Banu JR, Kumar G, Chattopadhyay I. Management of microbial enzymes for biofuels and biogas production by using
metagenomic and genome editing approaches. 3 Biotech. 2021 Oct;11(10):429.
Ma Z, Cheah WY, Ng IS, Chang JS, Zhao M, Show PL. Microalgae-based biotechnological sequestration of carbon
dioxide for net zero emissions. Trends in biotechnology. 2022 Dec 1;40(12):1439-53.
Kuo EY, Yang RY, Chin YY, Chien YL, Chen YC, Wei CY, Kao LJ, Chang YH, Li YJ, Chen TY, Lee TM. Multiomics
approaches and genetic engineering of metabolism for improved biorefinery and wastewater treatment in microalgae.
Biotechnology Journal. 2022 Aug;17(8):2100603.
Grama SB, Liu Z, Li J. Emerging trends in genetic engineering of microalgae for commercial applications. Marine
Drugs. 2022 Apr 24;20(5):285.
Kumar L, Mohan L, Anand R, Joshi V, Chugh M, Bharadvaja N. A review on unit operations, challenges, opportunities,
and strategies to improve algal based biodiesel and biorefinery. Frontiers in Chemical Engineering. 2022 Oct
;4:998289.
Castiglia D, Landi S, Esposito S. Advanced applications for protein and compounds from microalgae. Plants. 2021
Aug 16;10(8):1686.
Mohan C, Easterling M, Yau YY. Gene editing technologies for sugarcane improvement: opportunities and limitations.
Sugar Tech. 2022 Feb;24(1):369-85.
Kasai Y, Takagi S, Ota S, Ishii K, Takeshita T, Kawano S, Harayama S. Development of efficient genetictransformation-and genome-editing systems, and the isolation of a CRISPR/Cas9-mediated high-oil mutant in the
unicellular green alga Parachlorella kessleri strain NIES-2152.
Noman M, Shahid M, Ahmed T, Javed MR, Manzoor N, Mazoor I, Shah AA, Maqsood A, Arshad M. Lignocellulosic
biomass and microbial genome engineering for sustainable ethanol production: an overview. Sustainable ethanol and
climate change: sustainability assessment for ethanol distilleries. 2020 Nov 14:87-112.
Singh P, Dimri R, Chamoli P, Jha SK. ADVANCED PRE-PROCESSING STRATEGIES FOR LIGNOCELLULOSIC
BIOMASS APPLYING GENETIC ENGINEERING AND NANOTECHNOLOGY TO INCREASE BIOETHANOL
YIELD. Journal of Pharmaceutical Negative Results. 2022 Oct 2;13.
Shen Y, Motomura T, Ichihara K, Matsuda Y, Yoshimura K, Kosugi C, Nagasato C. Application of CRISPR-Cas9
genome editing by microinjection of gametophytes of Saccharina japonica (Laminariales, Phaeophyceae). Journal of
Applied Phycology. 2023 Jun;35(3):1431-41.
Lang I, Bashir S, Lorenz M, Rader S, Weber G. Exploiting the potential of Cyanidiales as a valuable resource for
biotechnological applications. Applied Phycology. 2022 Dec 31;3(1):199-210.
Mutanda T, Naidoo D, Bwapwa JK, Anandraj A. Biotechnological applications of microalgal oleaginous compounds:
current trends on microalgal bioprocessing of products. Frontiers in Energy Research. 2020 Dec 17;8:598803.
Muras A, Romero M, Mayer C, Otero A. Biotechnological applications of Bacillus licheniformis. Critical Reviews in
Biotechnology. 2021 May 19;41(4):609-27.
Yadav RK, Tripathi MK, Tiwari S, Tripathi N, Asati R, Chauhan S, Tiwari PN, Payasi DK. Genome editing and
improvement of abiotic stress tolerance in crop plants. Life. 2023 Jun 27;13(7):1456.
Lu Y, Zhang X, Lin H, Melis A. Engineering microalgae: transition from empirical design to programmable cells.
Algal Biotechnology. 2023 Nov 30:1-31.
Tripathi S, Choudhary S, Meena A, Poluri KM. Carbon capture, storage, and usage with microalgae: a review.
Environmental chemistry letters. 2023 Aug;21(4):2085-128.
Tanaka T, Maeda Y, Suhaimi N, Tsuneoka C, Nonoyama T, Yoshino T, Kato N, Lauersen KJ. Intron-mediated
enhancement of transgene expression in the oleaginous diatom Fistulifera solaris towards bisabolene production. Algal
Research. 2021 Jul 1;57:102345.
Gabriel R, Prinz J, Jecmenica M, Romero-Vazquez C, Chou P, Harth S, Floerl L, Curran L, Oostlander A, Matz L,
Fritsche S. Development of genetic tools for the thermophilic filamentous fungus Thermoascus aurantiacus.
Biotechnology for biofuels. 2020 Oct 10;13(1):167.
Aileni M. Environment sustainability and role of biotechnology. Innovations in environmental biotechnology. 2022
May 17:21-64.
Noel EA, Weeks DP, Van Etten JL. Pursuit of chlorovirus genetic transformation and CRISPR/Cas9-mediated gene
editing. PLoS One. 2021 Oct 21;16(10):e0252696.
Chen J, Huang Y, Shu Y, Hu X, Wu D, Jiang H, Wang K, Liu W, Fu W. Recent progress on systems and synthetic
biology of diatoms for improving algal productivity. Frontiers in Bioengineering and Biotechnology. 2022 May
;10:908804.
Zafar SU, Mehra A, Jutur PP. Synthetic biology-based advanced biotechnological approach in microalgal biorefinery.
InMicro-algae: Next-generation Feedstock for Biorefineries: Contemporary Technologies and Future Outlook 2022
Jul 27 (pp. 205-230). Singapore: Springer Nature Singapore.
Trovão Dos Santos M, Schüler LM, Machado A, Bombo G, Navalho S, Barros A, Pereira H, Silva J, Freitas F, Varela
J. Random mutagenesis as a promising tool for microalgal strain improvement towards industrial production.
Torky A. Integrated Omics and Mutation in Algae. Handbook of Research on Algae as a Sustainable Solution for Food,
Energy, and the Environment. 2022 Jun 3:109.
Vecchi V, Barera S, Bassi R, Dall’Osto L. Potential and challenges of improving photosynthesis in algae. Plants. 2020
Jan 3;9(1):67.
Ahuja V, Arora A, Chauhan S, Thakur S, Jeyaseelan C, Paul D. Yeast-mediated biomass valorization for biofuel
production: A literature review. Fermentation. 2023 Aug 24;9(9):784
Downloads
Published
How to Cite
Issue
Section
License
Copyright (c) 2025 International Journal For Research In Biology & Pharmacy

This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License.
In consideration of the journal, Green Publication taking action in reviewing and editing our manuscript, the authors undersigned hereby transfer, assign, or otherwise convey all copyright ownership to the Editorial Office of the Green Publication in the event that such work is published in the journal. Such conveyance covers any product that may derive from the published journal, whether print or electronic. Green Publication shall have the right to register copyright to the Article in its name as claimant, whether separately
or as part of the journal issue or other medium in which the Article is included.
By signing this Agreement, the author(s), and in the case of a Work Made For Hire, the employer, jointly and severally represent and warrant that the Article is original with the author(s) and does not infringe any copyright or violate any other right of any third parties, and that the Article has not been published elsewhere, and is not being considered for publication elsewhere in any form, except as provided herein. Each author’s signature should appear below. The signing author(s) (and, in



